pip install biopython
python
from Bio import SeqIO
from Bio import pairwise2
from Bio.pairwise2 import format_alignment
python
python
python
for alignment in alignments:
print(format_alignment(*alignment))
python
from Bio import SeqIO
from Bio import pairwise2
from Bio.pairwise2 import format_alignment
seq1 = SeqIO.read("sequence1.fasta", "fasta")
seq2 = SeqIO.read("sequence2.fasta", "fasta")
alignments = pairwise2.align.globalxx(seq1.seq, seq2.seq)
for alignment in alignments:
print(format_alignment(*alignment))